4KV8 image
Deposition Date 2013-05-22
Release Date 2013-07-31
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4KV8
Keywords:
Title:
Crystal structure of HIV RT in complex with BILR0355BS
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV Reverse transcriptase P66
Gene (Uniprot):gag-pol
Chain IDs:A
Chain Length:564
Number of Molecules:1
Biological Source:HIV-1 M:B_HXB2R
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV Reverse transcriptase P51
Gene (Uniprot):gag-pol
Chain IDs:B
Chain Length:442
Number of Molecules:1
Biological Source:HIV-1 M:B_HXB2R
Peptide-like Molecules
PRD_900003
Primary Citation
N- versus O-alkylation: Utilizing NMR methods to establish reliable primary structure determinations for drug discovery.
Bioorg.Med.Chem.Lett. 23 4663 4668 (2013)
PMID: 23809849 DOI: 10.1016/j.bmcl.2013.06.007

Abstact

A classic synthetic issue that remains unresolved is the reaction that involves the control of N- versus O-alkylation of ambident anions. This common chemical transformation is important for medicinal chemists, who require predictable and reliable protocols for the rapid synthesis of inhibitors. The uncertainty of whether the product(s) are N- and/or O-alkylated is common and can be costly if undetermined. Herein, we report an NMR-based strategy that focuses on distinguishing inhibitors and intermediates that are N- or O-alkylated. The NMR strategy involves three independent and complementary methods. However, any combination of two of the methods can be reliable if the third were compromised due to resonance overlap or other issues. The timely nature of these methods (HSQC/HMQC, HMBC. ROESY, and (13)C shift predictions) allows for contemporaneous determination of regioselective alkylation as needed during the optimization of synthetic routes.

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Primary Citation of related structures