4KV5 image
Deposition Date 2013-05-22
Release Date 2014-09-24
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4KV5
Keywords:
Title:
scFv GC1009 in complex with TGF-beta1.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.30
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transforming growth factor beta-1 proprotein
Gene (Uniprot):TGFB1
Chain IDs:A (auth: C), B (auth: D), C (auth: A), D (auth: B)
Chain Length:112
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Single-chain variable fragment GC1009
Chain IDs:E (auth: J), F (auth: H), G (auth: E), H (auth: G)
Chain Length:252
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structures of a pan-specific antagonist antibody complexed to different isoforms of TGF beta reveal structural plasticity of antibody-antigen interactions.
Protein Sci. 23 1698 1707 (2014)
PMID: 25209176 DOI: 10.1002/pro.2548

Abstact

Various important biological pathways are modulated by TGFβ isoforms; as such they are potential targets for therapeutic intervention. Fresolimumab, also known as GC1008, is a pan-TGFβ neutralizing antibody that has been tested clinically for several indications including an ongoing trial for focal segmental glomerulosclerosis. The structure of the antigen-binding fragment of fresolimumab (GC1008 Fab) in complex with TGFβ3 has been reported previously, but the structural capacity of fresolimumab to accommodate tight interactions with TGFβ1 and TGFβ2 was insufficiently understood. We report the crystal structure of the single-chain variable fragment of fresolimumab (GC1008 scFv) in complex with target TGFβ1 to a resolution of 3.00 Å and the crystal structure of GC1008 Fab in complex with TGFβ2 to 2.83 Å. The structures provide further insight into the details of TGFβ recognition by fresolimumab, give a clear indication of the determinants of fresolimumab pan-specificity and provide potential starting points for the development of isoform-specific antibodies using a fresolimumab scaffold.

Legend

Protein

Chemical

Disease

Primary Citation of related structures