4KRZ image
Deposition Date 2013-05-17
Release Date 2014-11-19
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4KRZ
Keywords:
Title:
Apo crystal structure of pyruvate kinase (PYK) from Trypanosoma cruzi
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pyruvate kinase
Gene (Uniprot):Tc00.1047053511281.60
Chain IDs:A, B
Chain Length:519
Number of Molecules:2
Biological Source:Trypanosoma cruzi
Primary Citation
Structures of pyruvate kinases display evolutionarily divergent allosteric strategies.
R Soc Open Sci 1 140120 140120 (2014)
PMID: 26064527 DOI: 10.1098/rsos.140120

Abstact

The transition between the inactive T-state (apoenzyme) and active R-state (effector bound enzyme) of Trypanosoma cruzi pyruvate kinase (PYK) is accompanied by a symmetrical 8° rigid body rocking motion of the A- and C-domain cores in each of the four subunits, coupled with the formation of additional salt bridges across two of the four subunit interfaces. These salt bridges provide increased tetramer stability correlated with an enhanced specificity constant (k cat/S 0.5). A detailed kinetic and structural comparison between the potential drug target PYKs from the pathogenic protists T. cruzi, T. brucei and Leishmania mexicana shows that their allosteric mechanism is conserved. By contrast, a structural comparison of trypanosomatid PYKs with the evolutionarily divergent PYKs of humans and of bacteria shows that they have adopted different allosteric strategies. The underlying principle in each case is to maximize (k cat/S 0.5) by stabilizing and rigidifying the tetramer in an active R-state conformation. However, bacterial and mammalian PYKs have evolved alternative ways of locking the tetramers together. In contrast to the divergent allosteric mechanisms, the PYK active sites are highly conserved across species. Selective disruption of the varied allosteric mechanisms may therefore provide a useful approach for the design of species-specific inhibitors.

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