4KNR image
Entry Detail
PDB ID:
4KNR
Title:
Hin GlmU bound to WG188
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-05-10
Release Date:
2014-10-15
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bifunctional protein GlmU
Chain IDs:A
Chain Length:456
Number of Molecules:1
Biological Source:Haemophilus influenzae
Primary Citation
Rational design of inhibitors of the bacterial cell wall synthetic enzyme GlmU using virtual screening and lead-hopping.
Bioorg.Med.Chem. 22 6256 6269 (2014)
PMID: 25262942 DOI: 10.1016/j.bmc.2014.08.017

Abstact

An aminoquinazoline series targeting the essential bacterial enzyme GlmU (uridyltransferase) were previously reported (Biochem. J.2012, 446, 405). In this study, we further explored SAR through a combination of traditional medicinal chemistry and structure-based drug design, resulting in a novel scaffold (benzamide) with selectivity against protein kinases. Virtual screening identified fragments that could be fused into the core scaffold, exploiting additional binding interactions and thus improving potency. These efforts resulted in a hybrid compound with target potency increased by a 1000-fold, while maintaining selectivity against selected protein kinases and an improved level of solubility and protein binding. Despite these significant improvements no significant antibacterial activity was yet observed within this class.

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Primary Citation of related structures