ISDA: 4KIN

Deposition Date 2013-05-02

Release Date 2013-06-12

Last Version Date 2024-02-28

Entry Detail

PDB ID:

4KIN

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal structure of mitogen-activated protein kinase 14 (P38-H5) complex with 5-(2-CHLOROPHENYL)-N-(5-(CYCLOPROPYLCARBAMOYL)-2-METHYLPHENYL)-2-THIOPHENECARBOXAMIDE

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.97 Å

R-Value Free:

0.21

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase 14
Gene (Uniprot):MAPK14
Chain IDs:A, B, C, D
Chain Length:366
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:Q16539 Pfam ID:PF00069 EC:2.7.11.24

Ligand Molecules

1M8

Primary Citation

The Identification of Novel P38-Alpha Isoform Selective Kinase Inhibitors Having an Unprecedented P38-Alpha Binding Mode

Wrobleski, S.T, Lin, S, Murali Dhar, T.G, Dyckman, A.J, Li, T, Pitt, S, Zhang, R, Fan, Y, Doweyko, A.M, Tokarski, J.S, Kish, K.F, Kiefer, S.E, Sack, J.S, Newitt, J.A, Witmer, M.R, McKinnon, M, Barrish, J.C, Dodd, J.H, Schieven, G.L, Leftheris, K.Show

Bioorg.Med.Chem.Lett. 23 4120 4126 (2013)

PMID: 23746475 DOI: 10.1016/j.bmcl.2013.05.047

Abstact

A novel series of p38 MAP kinase inhibitors with high selectivity for the p38α isoform over the other family members including the highly homologous p38β isoform has been identified. X-ray co-crystallographic studies have revealed an unprecedented kinase binding mode in p38α for representative analogs, 5c and 9d, in which a Leu108/Met109 peptide flip occurs within the p38α hinge region. Based on these findings, a general strategy for the rational design of additional promising p38α isoform selective inhibitors by targeting this novel binding mode is proposed.

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