4KGC image
Entry Detail
PDB ID:
4KGC
Title:
Nucleosome Core Particle Containing (ETA6-P-CYMENE)-(1, 2-ETHYLENEDIAMINE)-RUTHENIUM
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2013-04-29
Release Date:
2014-03-26
Method Details:
Experimental Method:
Resolution:
2.69 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone H3.2
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Histone H2A
Chain IDs:C, G
Chain Length:130
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Histone H2B 1.1
Chain IDs:D, H
Chain Length:126
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polydeoxyribonucleotide
Description:DNA (145-mer)
Chain IDs:I
Chain Length:145
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (145-mer)
Chain IDs:J
Chain Length:145
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Ligand substitutions between ruthenium-cymene compounds can control protein versus DNA targeting and anticancer activity
Nat Commun 5 3462 3462 (2014)
PMID: 24637564 DOI: 10.1038/ncomms4462

Abstact

Ruthenium compounds have become promising alternatives to platinum drugs by displaying specific activities against different cancers and favourable toxicity and clearance properties. Nonetheless, their molecular targeting and mechanism of action are poorly understood. Here we study two prototypical ruthenium-arene agents-the cytotoxic antiprimary tumour compound [(η(6)-p-cymene)Ru(ethylene-diamine)Cl]PF6 and the relatively non-cytotoxic antimetastasis compound [(η(6)-p-cymene)Ru(1,3,5-triaza-7-phosphaadamantane)Cl2]-and discover that the former targets the DNA of chromatin, while the latter preferentially forms adducts on the histone proteins. Using a novel 'atom-to-cell' approach, we establish the basis for the surprisingly site-selective adduct formation behaviour and distinct cellular impact of these two chemically similar anticancer agents, which suggests that the cytotoxic effects arise largely from DNA lesions, whereas the protein adducts may be linked to the other therapeutic activities. Our study shows promise for developing new ruthenium drugs, via ligand-based modulation of DNA versus protein binding and thus cytotoxic potential, to target distinguishing epigenetic features of cancer cells.

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Primary Citation of related structures