4KDT image
Deposition Date 2013-04-25
Release Date 2013-08-28
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4KDT
Keywords:
Title:
Structure of an early native-like intermediate of beta2-microglobulin amyloidosis
Biological Source:
Source Organism:
Camelidae (Taxon ID: 9835)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nanobody24
Mutagens:P32G
Chain IDs:A, B
Chain Length:134
Number of Molecules:2
Biological Source:Camelidae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:C, D
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure of an early native-like intermediate of beta 2-microglobulin amyloidogenesis.
Protein Sci. 22 1349 1357 (2013)
PMID: 23904325 DOI: 10.1002/pro.2321

Abstact

To investigate early intermediates of β2-microglobulin (β2m) amyloidogenesis, we solved the structure of β2m containing the amyloidogenic Pro32Gly mutation by X-ray crystallography. One nanobody (Nb24) that efficiently blocks fibril elongation was used as a chaperone to co-crystallize the Pro32Gly β2m monomer under physiological conditions. The complex of P32G β2m with Nb24 reveals a trans peptide bond at position 32 of this amyloidogenic variant, whereas Pro32 adopts the cis conformation in the wild-type monomer, indicating that the cis to trans isomerization at Pro32 plays a critical role in the early onset of β2m amyloid formation.

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Primary Citation of related structures