4KDP image
Deposition Date 2013-04-25
Release Date 2014-03-19
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4KDP
Title:
TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.28
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TcaR transcription regulator
Chain IDs:A, B, C, D, E, F, G
Chain Length:151
Number of Molecules:7
Biological Source:Staphylococcus epidermidis
Primary Citation
TcaR-ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins.
Nucleic Acids Res. 42 5314 5321 (2014)
PMID: 24531929 DOI: 10.1093/nar/gku128

Abstact

The teicoplanin-associated locus regulator (TcaR) regulates gene expression of proteins on the intercellular adhesion (ica) locus involved in staphylococci poly-N-acetylglucosamine biosynthesis. The absence of TcaR increases poly-N-acetylglucosamine production and promotes biofilm formation. Until recently, the mechanism of multiple antibiotic resistance regulator family protein members, such as TcaR, was restricted to binding double-stranded DNA. However, we recently found that TcaR strongly interacts with single-stranded DNA, which is a new role for this family of proteins. In this study, we report Staphylococcus epidermidis TcaR-single-stranded DNA complex structures. Our model suggests that TcaR and single-stranded DNA form a 61-symmetry polymer composed of TcaR dimers with single-stranded DNA that wraps outside the polymer and 12 nt per TcaR dimer. Single-stranded DNA binding to TcaR involves a large conformational change at the DNA binding lobe. Several point mutations involving the single-stranded DNA binding surface validate interactions between single-stranded DNA and TcaR. Our results extend the novel role of multiple antibiotic resistance regulator family proteins in staphylococci.

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