ISDA: 4KBI

Deposition Date 2013-04-23

Release Date 2013-05-08

Last Version Date 2024-03-13

Entry Detail

PDB ID:

4KBI

Keywords:

REPLICATION/REPLICATION INHIBITOR

Title:

HCV NS5B GT1B N316Y with CMPD 4

Biological Source:

Source Organism(s):

Hepatitis C virus (Taxon ID: 31647)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.06 Å

R-Value Free:

0.25

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HCV Polymerase
Mutagens:L47Q, F101Y, K114R, N316Y
Chain IDs:A, B
Chain Length:580
Number of Molecules:2
Biological Source:Hepatitis C virus

UniProt ID:P26663 Pfam ID:PF00998 EC:3.4.21.98

Ligand Molecules

1C0

Primary Citation

Discovery of a Potent Boronic Acid Derived Inhibitor of the HCV RNA-Dependent RNA Polymerase.

Maynard, A, Crosby, R.M, Ellis, B, Hamatake, R, Hong, Z, Johns, B.A, Kahler, K.M, Koble, C, Leivers, A, Leivers, M.R, Mathis, A, Peat, A.J, Pouliot, J.J, Roberts, C.D, Samano, V, Schmidt, R.M, Smith, G.K, Spaltenstein, A, Stewart, E.L, Thommes, P, Turner, E.M, Voitenleitner, C, Walker, J.T, Waitt, G, Weatherhead, J, Weaver, K, Williams, S, Wright, L, Xiong, Z.Z, Haigh, D, Shotwell, J.B.Show

J.Med.Chem. 57 1902 1913 (2014)

PMID: 23672667 DOI: 10.1021/jm400317w

Abstact

A boronic acid moiety was found to be a critical pharmacophore for enhanced in vitro potency against wild-type hepatitis C replicons and known clinical polymorphic and resistant HCV mutant replicons. The synthesis, optimization, and structure-activity relationships associated with inhibition of HCV replication in a subgenomic replication system for a series of non-nucleoside boron-containing HCV RNA-dependent RNA polymerase (NS5B) inhibitors are described. A summary of the discovery of 3 (GSK5852), a molecule which entered clinical trials in subjects infected with HCV in 2011, is included.

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Chemical

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Primary Citation of related structures

Abstact

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