4K3C image
Deposition Date 2013-04-10
Release Date 2013-09-04
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4K3C
Title:
The crystal structure of BamA from Haemophilus ducreyi lacking POTRA domains 1-3
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.91 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamA
Gene (Uniprot):D15
Chain IDs:A
Chain Length:532
Number of Molecules:1
Biological Source:Haemophilus ducreyi
Primary Citation
Structural insight into the biogenesis of beta-barrel membrane proteins.
Nature 501 385 390 (2013)
PMID: 23995689 DOI: 10.1038/nature12521

Abstact

β-barrel membrane proteins are essential for nutrient import, signalling, motility and survival. In Gram-negative bacteria, the β-barrel assembly machinery (BAM) complex is responsible for the biogenesis of β-barrel membrane proteins, with homologous complexes found in mitochondria and chloroplasts. Here we describe the structure of BamA, the central and essential component of the BAM complex, from two species of bacteria: Neisseria gonorrhoeae and Haemophilus ducreyi. BamA consists of a large periplasmic domain attached to a 16-strand transmembrane β-barrel domain. Three structural features shed light on the mechanism by which BamA catalyses β-barrel assembly. First, the interior cavity is accessible in one BamA structure and conformationally closed in the other. Second, an exterior rim of the β-barrel has a distinctly narrowed hydrophobic surface, locally destabilizing the outer membrane. And third, the β-barrel can undergo lateral opening, suggesting a route from the interior cavity in BamA into the outer membrane.

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Primary Citation of related structures
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