4K2J image
Deposition Date 2013-04-09
Release Date 2013-11-06
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4K2J
Title:
Decameric ring structure of KSHV (HHV-8) latency-associated nuclear antigen (LANA) DNA binding domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:KSHV (HHV-8) latency-associated nuclear antigen (LANA)
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:140
Number of Molecules:10
Biological Source:Human herpesvirus 8
Primary Citation
Molecular Basis for Oligomeric-DNA Binding and Episome Maintenance by KSHV LANA.
Plos Pathog. 9 e1003672 e1003672 (2013)
PMID: 24146617 DOI: 10.1371/journal.ppat.1003672

Abstact

LANA is the KSHV-encoded terminal repeat binding protein essential for viral replication and episome maintenance during latency. We have determined the X-ray crystal structure of LANA C-terminal DNA binding domain (LANADBD) to reveal its capacity to form a decameric ring with an exterior DNA binding surface. The dimeric core is structurally similar to EBV EBNA1 with an N-terminal arm that regulates DNA binding and is required for replication function. The oligomeric interface between LANA dimers is dispensable for single site DNA binding, but is required for cooperative DNA binding, replication function, and episome maintenance. We also identify a basic patch opposite of the DNA binding surface that is responsible for the interaction with BRD proteins and contributes to episome maintenance function. The structural features of LANADBD suggest a novel mechanism of episome maintenance through DNA-binding induced oligomeric assembly.

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