ISDA

Deposition Date 2013-03-25

Release Date 2013-05-01

Last Version Date 2024-02-28

Entry Detail

PDB ID:

4JV9

Keywords:

LIGASE/LIGASE INHIBITOR

Title:

Co-crystal structure of MDM2 with inhibitor (2S,5R,6S)-2-benzyl-5,6-bis(4-chlorophenyl)-4-methylmorpholin-3-one

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.27

R-Value Work:

0.24

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase Mdm2
Gene (Uniprot):MDM2
Chain IDs:A
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q00987 Pfam ID:PF02201 EC:2.3.2.27

Ligand Molecules

1MO

SO4

Primary Citation

Rational Design and Binding Mode Duality of MDM2-p53 Inhibitors.

Gonzalez-Lopez de Turiso, F, Sun, D, Rew, Y, Bartberger, M.D, Beck, H.P, Canon, J, Chen, A, Chow, D, Correll, T.L, Huang, X, Julian, L.D, Kayser, F, Lo, M.C, Long, A.M, McMinn, D, Oliner, J.D, Osgood, T, Powers, J.P, Saiki, A.Y, Schneider, S, Shaffer, P, Xiao, S.H, Yakowec, P, Yan, X, Ye, Q, Yu, D, Zhao, X, Zhou, J, Medina, J.C, Olson, S.H.Show

J.Med.Chem. 56 4053 4070 (2013)

PMID: 23597064 DOI: 10.1021/jm400293z

Abstact

Structural analysis of both the MDM2-p53 protein-protein interaction and several small molecules bound to MDM2 led to the design and synthesis of tetrasubstituted morpholinone 10, an MDM2 inhibitor with a biochemical IC50 of 1.0 μM. The cocrystal structure of 10 with MDM2 inspired two independent optimization strategies and resulted in the discovery of morpholinones 16 and 27 possessing distinct binding modes. Both analogues were potent MDM2 inhibitors in biochemical and cellular assays, and morpholinone 27 (IC50 = 0.10 μM) also displayed suitable PK profile for in vivo animal experiments. A pharmacodynamic (PD) experiment in mice implanted with human SJSA-1 tumors showed p21(WAF1) mRNA induction (2.7-fold over vehicle) upon oral dosing of 27 at 300 mg/kg.

Legend

Protein

Chemical

Disease

Primary Citation of related structures