ISDA

Deposition Date 2013-03-24

Release Date 2013-11-27

Last Version Date 2023-09-20

Entry Detail

PDB ID:

4JU7

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal structure of hcv ns5b polymerase in complex with compound 24

Biological Source:

Source Organism:

Hepatitis C virus (Taxon ID: 420174)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.20 Å

R-Value Free:

0.27

R-Value Work:

0.24

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:A, B
Chain Length:576
Number of Molecules:2
Biological Source:Hepatitis C virus

UniProt ID:O92972 Pfam ID:PF00998 EC:2.7.7.48

Ligand Molecules

1O6

Primary Citation

Anthranilic acid-based Thumb Pocket 2 HCV NS5B polymerase inhibitors with sub-micromolar potency in the cell-based replicon assay.

Stammers, T.A, Coulombe, R, Duplessis, M, Fazal, G, Gagnon, A, Garneau, M, Goulet, S, Jakalian, A, Laplante, S, Rancourt, J, Thavonekham, B, Wernic, D, Kukolj, G, Beaulieu, P.L.Show

Bioorg.Med.Chem.Lett. 23 6879 6885 (2013)

PMID: 24176401 DOI: 10.1016/j.bmcl.2013.09.102

Abstact

Optimization efforts on the anthranilic acid-based Thumb Pocket 2 HCV NS5B polymerase inhibitors 1 and 2 resulted in the identification of multiple structural elements that contributed to improved cell culture potency. The additive effect of these elements resulted in compound 46, an inhibitor with enzymatic (IC50) and cell culture (EC50) potencies of less than 100 nanomolar.

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Primary Citation of related structures