4JPV image
Deposition Date 2013-03-19
Release Date 2013-04-17
Last Version Date 2024-10-09
Entry Detail
PDB ID:
4JPV
Title:
Crystal structure of broadly and potently neutralizing antibody 3bnc117 in complex with hiv-1 gp120
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.83 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HIV-1 CLADE A STRAIN 93TH057 GP120 WITH LOOP d AND LOOPD V5 REPLACED FROM HIV STRAIN 3415V1
Chain IDs:A (auth: G)
Chain Length:352
Number of Molecules:1
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS 1
Polymer Type:polypeptide(L)
Molecule:HEAVY CHAIN OF ANTIBODY 3BNC117
Chain IDs:B (auth: H)
Chain Length:226
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:LIGHT CHAIN OF ANTIBODY 3BNC117
Chain IDs:C (auth: L)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Somatic Mutations of the Immunoglobulin Framework Are Generally Required for Broad and Potent HIV-1 Neutralization.
Cell(Cambridge,Mass.) 153 126 138 (2013)
PMID: 23540694 DOI: 10.1016/j.cell.2013.03.018

Abstact

Broadly neutralizing antibodies (bNAbs) to HIV-1 can prevent infection and are therefore of great importance for HIV-1 vaccine design. Notably, bNAbs are highly somatically mutated and generated by a fraction of HIV-1-infected individuals several years after infection. Antibodies typically accumulate mutations in the complementarity determining region (CDR) loops, which usually contact the antigen. The CDR loops are scaffolded by canonical framework regions (FWRs) that are both resistant to and less tolerant of mutations. Here, we report that in contrast to most antibodies, including those with limited HIV-1 neutralizing activity, most bNAbs require somatic mutations in their FWRs. Structural and functional analyses reveal that somatic mutations in FWR residues enhance breadth and potency by providing increased flexibility and/or direct antigen contact. Thus, in bNAbs, FWRs play an essential role beyond scaffolding the CDR loops and their unusual contribution to potency and breadth should be considered in HIV-1 vaccine design.

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Primary Citation of related structures