4JPI image
Deposition Date 2013-03-19
Release Date 2013-04-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4JPI
Keywords:
Title:
Crystal structure of a putative VRC01 germline precursor Fab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative VRC01 germline Fab heavy chain
Chain IDs:A (auth: H), C (auth: A)
Chain Length:248
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Putative VRC01 germline Fab light chain
Chain IDs:B (auth: L), D (auth: B)
Chain Length:210
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Rational HIV immunogen design to target specific germline B cell receptors.
Science 340 711 716 (2013)
PMID: 23539181 DOI: 10.1126/science.1234150

Abstact

Vaccine development to induce broadly neutralizing antibodies (bNAbs) against HIV-1 is a global health priority. Potent VRC01-class bNAbs against the CD4 binding site of HIV gp120 have been isolated from HIV-1-infected individuals; however, such bNAbs have not been induced by vaccination. Wild-type gp120 proteins lack detectable affinity for predicted germline precursors of VRC01-class bNAbs, making them poor immunogens to prime a VRC01-class response. We employed computation-guided, in vitro screening to engineer a germline-targeting gp120 outer domain immunogen that binds to multiple VRC01-class bNAbs and germline precursors, and elucidated germline binding crystallographically. When multimerized on nanoparticles, this immunogen (eOD-GT6) activates germline and mature VRC01-class B cells. Thus, eOD-GT6 nanoparticles have promise as a vaccine prime. In principle, germline-targeting strategies could be applied to other epitopes and pathogens.

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Primary Citation of related structures