4JPG image
Entry Detail
PDB ID:
4JPG
Title:
2-((1H-benzo[d]imidazol-1-yl)methyl)-4H-pyrido[1,2-a]pyrimidin-4-ones as Novel PKM2 Activators
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-03-19
Release Date:
2013-05-22
Method Details:
Experimental Method:
Resolution:
2.33 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvate kinase isozymes M1/M2
Chain IDs:A, B, C, D
Chain Length:556
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Discovery of 2-((1H-benzo[d]imidazol-1-yl)methyl)-4H-pyrido[1,2-a]pyrimidin-4-ones as novel PKM2 activators.
Bioorg.Med.Chem.Lett. 23 3358 3363 (2013)
PMID: 23622982 DOI: 10.1016/j.bmcl.2013.03.090

Abstact

The M2 isoform of pyruvate kinase is an emerging target for antitumor therapy. In this letter, we describe the discovery of 2-((1H-benzo[d]imidazol-1-yl)methyl)-4H-pyrido[1,2-a]pyrimidin-4-ones as potent and selective PKM2 activators which were found to have a novel binding mode. The original lead identified from high throughput screening was optimized into an efficient series via computer-aided structure-based drug design. Both a representative compound from this series and an activator described in the literature were used as molecular tools to probe the biological effects of PKM2 activation on cancer cells. Our results suggested that PKM2 activation alone is not sufficient to alter cancer cell metabolism.

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