ISDA

Deposition Date 2013-03-18

Release Date 2013-07-17

Last Version Date 2023-11-08

Entry Detail

PDB ID:

4JOA

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal Structure of Human Anaplastic Lymphoma Kinase in complex with 7-azaindole based inhibitor

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.28

R-Value Work:

0.25

R-Value Observed:

0.25

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ALK tyrosine kinase receptor
Gene (Uniprot):ALK
Mutations:S1281G
Chain IDs:A
Chain Length:344
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UM73 Pfam ID:PF07714 EC:2.7.10.1

Ligand Molecules

3DK

Primary Citation

Discovery of 7-azaindole based anaplastic lymphoma kinase (ALK) inhibitors: wild type and mutant (L1196M) active compounds with unique binding mode

Gummadi, V.R, Rajagopalan, S, Looi, C.Y, Paydar, M, Renukappa, G.A, Ainan, B.R, Krishnamurthy, N.R, Panigrahi, S.K, Mahasweta, K, Raghuramachandran, S, Rajappa, M, Ramanathan, A, Lakshminarasimhan, A, Ramachandra, M, Wong, P.F, Mustafa, M.R, Nanduri, S, Hosahalli, S.Show

Bioorg.Med.Chem.Lett. 23 4911 4918 (2013)

PMID: 23880539 DOI: 10.1016/j.bmcl.2013.06.071

Abstact

We have identified a novel 7-azaindole series of anaplastic lymphoma kinase (ALK) inhibitors. Compounds 7b, 7 m and 7 n demonstrate excellent potencies in biochemical and cellular assays. X-ray crystal structure of one of the compounds (7 k) revealed a unique binding mode with the benzyl group occupying the back pocket, explaining its potency towards ALK and selectivity over tested kinases particularly Aurora-A. This binding mode is in contrast to that of known ALK inhibitors such as Crizotinib and NVP-TAE684 which occupy the ribose binding pocket, close to DFG motif.

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Protein

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Disease

Primary Citation of related structures