4JO3 image
Deposition Date 2013-03-16
Release Date 2013-07-31
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4JO3
Title:
Crystal structure of rabbit mAb R20 Fab in complex with V3 C-terminus of HIV-1 Consensus B gp120
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:monoclonal anti-HIV-1 gp120 V3 antibody R20 heavy chain
Chain IDs:B (auth: H), E (auth: I)
Chain Length:227
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:monoclonal anti-HIV-1 gp120 V3 antibody R20 light chain
Chain IDs:A (auth: L), D (auth: M)
Chain Length:214
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:gp120
Chain IDs:C (auth: P), F (auth: Q)
Chain Length:15
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans.
J.Virol. 87 10221 10231 (2013)
PMID: 23864637 DOI: 10.1128/JVI.00843-13

Abstact

The rabbit is a commonly used animal model in studying antibody responses in HIV/AIDS vaccine development. However, no rabbit monoclonal antibodies (MAbs) have been developed previously to study the epitope-specific antibody responses against HIV-1 envelope (Env) glycoproteins, and little is known about how the rabbit immune system can mimic the human immune system in eliciting such antibodies. Here we present structural analyses of two rabbit MAbs, R56 and R20, against the third variable region (V3) of HIV-1 gp120. R56 recognizes the well-studied immunogenic region in the V3 crown, while R20 targets a less-studied region at the C terminus of V3. By comparison of the Fab/epitope complex structures of these two antibodies raised by immunization with that of the corresponding human antibodies derived from patients chronically infected with HIV-1, we found that rabbit antibodies can recognize immunogenic regions of gp120 and mimic the binding modes of human antibodies. This result can provide new insight into the use of the rabbit as an animal model in AIDS vaccine development.

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Primary Citation of related structures