4JN1 image
Deposition Date 2013-03-14
Release Date 2013-03-27
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4JN1
Keywords:
Title:
An Antidote for Dabigatran
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.89 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:anti-dabigatran Fab1, heavy chain
Chain IDs:A (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:anti-dabigatran Fab1, light chain
Chain IDs:B (auth: L)
Chain Length:219
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
A specific antidote for dabigatran: functional and structural characterization.
Blood 121 3554 3562 (2013)
PMID: 23476049 DOI: 10.1182/blood-2012-11-468207

Abstact

Dabigatran etexilate is a direct thrombin inhibitor and used widely as an anticoagulant for the prevention of stroke in patients with atrial fibrillation. However, anticoagulation therapy can be associated with an increased risk of bleeding. Here, we present data on the identification, humanization, and in vitro pharmacology of an antidote for dabigatran (aDabi-Fab). The X-ray crystal structure of dabigatran in complex with the antidote reveals many structural similarities of dabigatran recognition compared with thrombin. By a tighter network of interactions, the antidote achieves an affinity for dabigatran that is ~350 times stronger than its affinity for thrombin. Despite the structural similarities in the mode of dabigatran binding, the antidote does not bind known thrombin substrates and has no activity in coagulation tests or platelet aggregation. In addition we demonstrate that the antidote rapidly reversed the anticoagulant activity of dabigatran in vivo in a rat model of anticoagulation. This is the first report of a specific antidote for a next-generation anticoagulant that may become a valuable tool in patients who require emergency procedures.

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Primary Citation of related structures