4JJM image
Deposition Date 2013-03-08
Release Date 2013-06-12
Last Version Date 2023-12-06
Entry Detail
PDB ID:
4JJM
Title:
Structure of a cyclophilin from Citrus sinensis (CsCyp) in complex with cyclosporin A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.09 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase
Gene (Uniprot):CYP
Chain IDs:A, B
Chain Length:175
Number of Molecules:2
Biological Source:Citrus sinensis
Polymer Type:polypeptide(L)
Molecule:cyclosporin A
Chain IDs:C (auth: E), D (auth: F)
Chain Length:11
Number of Molecules:2
Biological Source:Tolypocladium inflatum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ABA C ALA ALPHA-AMINOBUTYRIC ACID
BMT C THR ?
MLE C LEU N-METHYLLEUCINE
MVA C VAL N-METHYLVALINE
SAR C GLY SARCOSINE
Peptide-like Molecules
PRD_000142
Primary Citation
A redox 2-cys mechanism regulates the catalytic activity of divergent cyclophilins.
Plant Physiol. 162 1311 1323 (2013)
PMID: 23709667 DOI: 10.1104/pp.113.218339

Abstact

The citrus (Citrus sinensis) cyclophilin CsCyp is a target of the Xanthomonas citri transcription activator-like effector PthA, required to elicit cankers on citrus. CsCyp binds the citrus thioredoxin CsTdx and the carboxyl-terminal domain of RNA polymerase II and is a divergent cyclophilin that carries the additional loop KSGKPLH, invariable cysteine (Cys) residues Cys-40 and Cys-168, and the conserved glutamate (Glu) Glu-83. Despite the suggested roles in ATP and metal binding, the functions of these unique structural elements remain unknown. Here, we show that the conserved Cys residues form a disulfide bond that inactivates the enzyme, whereas Glu-83, which belongs to the catalytic loop and is also critical for enzyme activity, is anchored to the divergent loop to maintain the active site open. In addition, we demonstrate that Cys-40 and Cys-168 are required for the interaction with CsTdx and that CsCyp binds the citrus carboxyl-terminal domain of RNA polymerase II YSPSAP repeat. Our data support a model where formation of the Cys-40-Cys-168 disulfide bond induces a conformational change that disrupts the interaction of the divergent and catalytic loops, via Glu-83, causing the active site to close. This suggests a new type of allosteric regulation in divergent cyclophilins, involving disulfide bond formation and a loop-displacement mechanism.

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Primary Citation of related structures