4JIB image
Deposition Date 2013-03-05
Release Date 2013-05-01
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4JIB
Title:
Crystal structure of of PDE2-inhibitor complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:cGMP-dependent 3',5'-cyclic phosphodiesterase
Gene (Uniprot):PDE2A
Chain IDs:A, B, C, D
Chain Length:345
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Discovery of potent, selective, bioavailable phosphodiesterase 2 (PDE2) inhibitors active in an osteoarthritis pain model, Part I: Transformation of selective pyrazolodiazepinone phosphodiesterase 4 (PDE4) inhibitors into selective PDE2 inhibitors.
Bioorg.Med.Chem.Lett. 23 3438 3442 (2013)
PMID: 23582272 DOI: 10.1016/j.bmcl.2013.03.072

Abstact

We identified potent, selective PDE2 inhibitors by optimizing residual PDE2 activity in a series of PDE4 inhibitors, while simultaneously minimizing PDE4 activity. These newly designed PDE2 inhibitors bind to the PDE2 enzyme in a cGMP-like mode in contrast to the cAMP-like binding mode found in PDE4. Structure activity relationship studies coupled with an inhibitor bound crystal structure in the active site of the catalytic domain of PDE2 identified structural features required to minimize PDE4 inhibition while simultaneously maximizing PDE2 inhibition.

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Primary Citation of related structures