4JFD image
Entry Detail
PDB ID:
4JFD
Keywords:
Title:
Preservation of peptide specificity during TCR-MHC contact dominated affinity enhancement of a melanoma-specific TCR
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-02-28
Release Date:
2013-05-29
Method Details:
Experimental Method:
Resolution:
2.46 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class I histocompatibility antigen, A-2 alpha chain
Chain IDs:A
Chain Length:276
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Melanoma peptide
Chain IDs:C
Chain Length:10
Number of Molecules:1
Biological Source:
Polymer Type:polypeptide(L)
Description:High Affinity TCR Alpha Chain
Chain IDs:D
Chain Length:196
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:High Affinity TCR Beta Chain
Chain IDs:E
Chain Length:245
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
T-cell receptor specificity maintained by altered thermodynamics.
J.Biol.Chem. 288 18766 18775 (2013)
PMID: 23698002 DOI: 10.1074/jbc.M113.464560

Abstact

The T-cell receptor (TCR) recognizes peptides bound to major histocompatibility molecules (MHC) and allows T-cells to interrogate the cellular proteome for internal anomalies from the cell surface. The TCR contacts both MHC and peptide in an interaction characterized by weak affinity (KD = 100 nM to 270 μM). We used phage-display to produce a melanoma-specific TCR (α24β17) with a 30,000-fold enhanced binding affinity (KD = 0.6 nM) to aid our exploration of the molecular mechanisms utilized to maintain peptide specificity. Remarkably, although the enhanced affinity was mediated primarily through new TCR-MHC contacts, α24β17 remained acutely sensitive to modifications at every position along the peptide backbone, mimicking the specificity of the wild type TCR. Thermodynamic analyses revealed an important role for solvation in directing peptide specificity. These findings advance our understanding of the molecular mechanisms that can govern the exquisite peptide specificity characteristic of TCR recognition.

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