4JD0 image
Deposition Date 2013-02-22
Release Date 2013-09-18
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4JD0
Keywords:
Title:
Structure of the inositol-1-phosphate CTP transferase from T. maritima.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.16
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nucleotidyl transferase
Chain IDs:A
Chain Length:251
Number of Molecules:1
Biological Source:Thermotoga maritima
Primary Citation
Structure of the inositol-1-phosphate cytidylyltransferase from Thermotoga maritima.
Acta Crystallogr.,Sect.D 69 1808 1817 (2013)
PMID: 23999304 DOI: 10.1107/S0907444913015278

Abstact

The unique steps in the synthesis of an unusual osmolyte in hyperthermophiles, di-myo-inositol-1,1'-phosphate (DIP), involve the production of CDP-inositol and its condensation with an inositol-1-phosphate molecule to form phosphorylated DIP. While many organisms fuse both activities into a single enzyme, the two are separate in Thermotoga maritima. The crystal structure of the T. maritima inositol-1-phosphate cytidylyltransferase, which as a soluble protein may transiently associate with its membrane-embedded partner phospho-DIP synthase (P-DIPS), has now been obtained. The structure shows a conserved motif of sugar nucleotide transferases (COG1213) with a structurally reinforced C-terminal Cys bonded to the core of the protein. A bound arsenosugar identifies the location of the active site for inositol 1-phosphate. Based on homologous structures from several species and the identification of the crucial conserved aspartate residue, a catalytic mechanism for this enzyme is proposed as well as a mode for its association with P-DIPS. This structure imposes constraints on the mode of association, communication and temperature activation of two separate enzymes in T. maritima. For the first time, a working model for the membrane-bound P-DIPS unit has been constructed. This sheds light on the functioning of the phosphatidylserine and phosphatidylinositol synthases involved in many physiological processes that are homologous to P-DIPS. This work provides fresh insights into the synthesis of the unusual thermoprotective compound DIP in hyperthermophiles.

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