4J88 image
Deposition Date 2013-02-14
Release Date 2013-06-26
Last Version Date 2023-11-15
Entry Detail
PDB ID:
4J88
Keywords:
FLUORESCENT PROTEIN
Title:
Dark-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 66
Biological Source:
Source Organism:
Aequorea victoria (Taxon ID: 6100)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.08 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
4J88 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Green fluorescent protein
Gene (Uniprot):GFP
Mutagens:S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V
Chain IDs:A, B
Chain Length:245
Number of Molecules:2
Biological Source:Aequorea victoria
UniProt ID:P42212 Pfam ID:PF01353
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CQ1 A THR ?
Ligand Molecules
EDO
SO4
TRS
Primary Citation
Different Photochemical Events of a Genetically Encoded Phenyl Azide Define and Modulate GFP Fluorescence.
Angew.Chem.Int.Ed.Engl. 52 5974 5977 (2013)
PMID: 23620472 DOI: 10.1002/anie.201301490

Abstact

Expanding the genetic code opens new avenues to modulate protein function in real time. By genetically incorporating photoreactive phenyl azide, the fluorescent properties of green fluorescent protein (GFP) can be modulated by light. Depending on the residue in GFP programmed to incorporate the phenyl azide, different effects on function and photochemical pathways are observed.

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Protein

Chemical

Disease

Primary Citation of related structures
4J89
4J8A