4J4P image
Deposition Date 2013-02-07
Release Date 2014-03-12
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4J4P
Keywords:
Title:
The complex of human IgE-Fc with two bound Fab fragments
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.91 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ig epsilon chain C region
Gene (Uniprot):IGHE
Mutations:N265Q, N371Q
Chain IDs:A, B
Chain Length:323
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G Fab Fragment Heavy Chain
Chain IDs:C (auth: H), E (auth: C)
Chain Length:249
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G Fab Fragment Light Chain
Chain IDs:D (auth: L), F (auth: D)
Chain Length:235
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Human immunoglobulin E flexes between acutely bent and extended conformations.
Nat.Struct.Mol.Biol. 21 397 404 (2014)
PMID: 24632569 DOI: 10.1038/nsmb.2795

Abstact

Crystallographic and solution studies have shown that IgE molecules are acutely bent in their Fc region. Crystal structures reveal the Cɛ2 domain pair folded back onto the Cɛ3-Cɛ4 domains, but is the molecule exclusively bent or can the Cɛ2 domains adopt extended conformations and even 'flip' from one side of the molecule to the other? We report the crystal structure of IgE-Fc captured in a fully extended, symmetrical conformation and show by molecular dynamics, calorimetry, stopped-flow kinetic, surface plasmon resonance (SPR) and Förster resonance energy transfer (FRET) analyses that the antibody can indeed adopt such extended conformations in solution. This diversity of conformational states available to IgE-Fc offers a new perspective on IgE function in allergen recognition, as part of the B-cell receptor and as a therapeutic target in allergic disease.

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Primary Citation of related structures