ISDA

Deposition Date 2013-02-01

Release Date 2013-05-01

Last Version Date 2024-11-06

Entry Detail

PDB ID:

4J1E

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4S,6S)-2-amino-4-fluoromethyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.78 Å

R-Value Free:

0.18

R-Value Work:

0.15

R-Value Observed:

0.15

Space Group:

P 61 2 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-secretase 1
Gene (Uniprot):BACE1
Mutations:K307A
Chain IDs:A
Chain Length:409
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P56817 Pfam ID:PF00026 EC:3.4.23.46

Ligand Molecules

1HM

DMS

Primary Citation

beta-Secretase (BACE1) Inhibitors with High In Vivo Efficacy Suitable for Clinical Evaluation in Alzheimer s Disease

Hilpert, H, Guba, W, Woltering, T.J, Wostl, W, Pinard, E, Mauser, H, Mayweg, A.V, Rogers-Evans, M, Humm, R, Krummenacher, D, Muser, T, Schnider, C, Jacobsen, H, Ozmen, L, Bergadano, A, Banner, D.W, Hochstrasser, R, Kuglstatter, A, David-Pierson, P, Fischer, H, Polara, A, Narquizian, R.Show

J.Med.Chem. 56 3980 3995 (2013)

PMID: 23590342 DOI: 10.1021/jm400225m

Abstact

An extensive fluorine scan of 1,3-oxazines revealed the power of fluorine(s) to lower the pKa and thereby dramatically change the pharmacological profile of this class of BACE1 inhibitors. The CF3 substituted oxazine 89, a potent and highly brain penetrant BACE1 inhibitor, was able to reduce significantly CSF Aβ40 and 42 in rats at oral doses as low as 1 mg/kg. The effect was long lasting, showing a significant reduction of Aβ40 and 42 even after 24 h. In contrast to 89, compound 1b lacking the CF3 group was virtually inactive in vivo.

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Disease

Primary Citation of related structures