ISDA: 4J02

Deposition Date 2013-01-30

Release Date 2013-04-17

Last Version Date 2024-10-30

Entry Detail

PDB ID:

4J02

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal structure of hcv ns5b polymerase in complex with [(1R)-5,8-DICHLORO-1-PROPYL-1,3,4,9-TETRAHYDROPYRANO[3,4-B]INDOL-1-YL]ACETIC ACID

Biological Source:

Source Organism:

Hepatitis C virus isolate (Taxon ID: 420174)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.00 Å

R-Value Free:

0.22

R-Value Work:

0.19

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:A, B
Chain Length:576
Number of Molecules:2
Biological Source:Hepatitis C virus isolate

UniProt ID:O92972 Pfam ID:PF00998 EC:2.7.7.48

Ligand Molecules

1JE

SO4

Primary Citation

Discovery of a novel series of non-nucleoside thumb pocket 2 HCV NS5B polymerase inhibitors.

Stammers, T.A, Coulombe, R, Rancourt, J, Thavonekham, B, Fazal, G, Goulet, S, Jakalian, A, Wernic, D, Tsantrizos, Y, Poupart, M.A, Bos, M, McKercher, G, Thauvette, L, Kukolj, G, Beaulieu, P.L.Show

Bioorg.Med.Chem.Lett. 23 2585 2589 (2013)

PMID: 23545108 DOI: 10.1016/j.bmcl.2013.02.110

Abstact

A novel series of non-nucleoside thumb pocket 2 HCV NS5B polymerase inhibitors were derived from a fragment-based approach using information from X-ray crystallographic analysis of NS5B-inhibitor complexes and iterative rounds of parallel synthesis. Structure-based drug design strategies led to the discovery of potent sub-micromolar inhibitors 11a-c and 12a-c from a weak-binding fragment-like structure 1 as a starting point.

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