4IZN image
Deposition Date 2013-01-30
Release Date 2014-02-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4IZN
Title:
Structure of pcDronpa-A69T mutant
Biological Source:
Source Organism:
Echinophyllia (Taxon ID: 301887)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fluorescent protein Dronpa
Gene (Uniprot):Dronpa
Mutations:V60A, C62H, A69T, N94S, N102I, E218G
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:257
Number of Molecules:12
Biological Source:Echinophyllia
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CR8 A HIS ?
Primary Citation
Green-to-red photoconvertible Dronpa mutant for multimodal super-resolution fluorescence microscopy
ACS Nano 8 1664 1673 (2014)
PMID: 24410188 DOI: 10.1021/nn4060144

Abstact

Advanced imaging techniques crucially depend on the labels used. In this work, we present the structure-guided design of a fluorescent protein that displays both reversibly photochromic and green-to-red photoconversion behavior. We first designed ffDronpa, a mutant of the photochromic fluorescent protein Dronpa that matures up to three times faster while retaining its interesting photochromic features. Using a combined evolutionary and structure-driven rational design strategy, we developed a green-to-red photoconvertible ffDronpa mutant, called pcDronpa, and explored different optimization strategies that resulted in its improved version, pcDronpa2. This fluorescent probe combines a high brightness with low photobleaching and photoblinking. We herein show that, despite its tetrameric nature, pcDronpa2 allows for multimodal subdiffraction imaging by sequentially imaging a given sample using both super-resolution fluctuation imaging and localization microscopy.

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