4IWX image
Deposition Date 2013-01-24
Release Date 2013-05-08
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4IWX
Keywords:
Title:
Rimk structure at 2.85A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 64 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S6 modification protein
Gene (Uniprot):rimK
Chain IDs:A
Chain Length:320
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Structure and function of Escherichia coli RimK, an ATP-grasp fold, l-glutamyl ligase enzyme.
Proteins 81 1847 1854 (2013)
PMID: 23609986 DOI: 10.1002/prot.24311

Abstact

We report herein the crystal structure of Escherichia coli RimK at a resolution of 2.85 Å, an enzyme that catalyzes the post-translational addition of up to 15 C-terminal glutamate residues to ribosomal protein S6. The structure belongs to the ATP-grasp superfamily and is organized as a tetramer, consistent with gel filtration analysis. Each subunit consists of three distinct structural domains and the active site is located in the cleft between these domains. The catalytic reaction appears to occur at the junction between the three domains as ATP binds between the B and C domains, and other substrates bind nearby.

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