4IUY image
Deposition Date 2013-01-21
Release Date 2013-03-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4IUY
Keywords:
Title:
Crystal structure of short-chain dehydrogenase/reductase (apo-form) from A. baumannii clinical strain WM99C
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Short chain dehydrogenase/reductase
Chain IDs:A, B, C (auth: E), D (auth: C), E (auth: H), F (auth: D), G (auth: F), H (auth: G)
Chain Length:274
Number of Molecules:8
Biological Source:Acinetobacter baumannii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure of a short-chain dehydrogenase/reductase (SDR) within a genomic island from a clinical strain of Acinetobacter baumannii.
Acta Crystallogr.,Sect.F 70 1318 1323 (2014)
PMID: 25286932 DOI: 10.1107/S2053230X14019785

Abstact

Over 15% of the genome of an Australian clinical isolate of Acinetobacter baumannii occurs within genomic islands. An uncharacterized protein encoded within one island feature common to this and other International Clone II strains has been studied by X-ray crystallography. The 2.4 Å resolution structure of SDR-WM99c reveals it to be a new member of the classical short-chain dehydrogenase/reductase (SDR) superfamily. The enzyme contains a nucleotide-binding domain and, like many other SDRs, is tetrameric in form. The active site contains a catalytic tetrad (Asn117, Ser146, Tyr159 and Lys163) and water molecules occupying the presumed NADP cofactor-binding pocket. An adjacent cleft is capped by a relatively mobile helical subdomain, which is well positioned to control substrate access.

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Primary Citation of related structures