4ISR image
Deposition Date 2013-01-17
Release Date 2013-08-14
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4ISR
Keywords:
Title:
Binding domain of Botulinum neurotoxin DC in complex with rat synaptotagmin II
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neurotoxin
Gene (Uniprot):nt
Chain IDs:A, B, C
Chain Length:431
Number of Molecules:3
Biological Source:Clostridium botulinum
Polymer Type:polypeptide(L)
Molecule:Synaptotagmin-2
Gene (Uniprot):Syt2
Chain IDs:D, E, F
Chain Length:21
Number of Molecules:3
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Crystal Structures of Botulinum Neurotoxin DC in Complex with Its Protein Receptors Synaptotagmin I and II.
Structure 21 1602 1611 (2013)
PMID: 23932591 DOI: 10.1016/j.str.2013.06.026

Abstact

Botulinum neurotoxins (BoNTs) can cause paralysis at exceptionally low concentrations and include seven serotypes (BoNT/A-G). The chimeric BoNT/DC toxin has a receptor binding domain similar to the same region in BoNT/C. However, BoNT/DC does not share protein receptor with BoNT/C. Instead, it shares synaptotagmin (Syt) I and II as receptors with BoNT/B, despite their low sequence similarity. Here, we present the crystal structures of the binding domain of BoNT/DC in complex with the recognition domains of its protein receptors, Syt-I and Syt-II. The structures reveal that BoNT/DC possesses a Syt binding site, distinct from the established Syt-II binding site in BoNT/B. Structure-based mutagenesis further shows that hydrophobic interactions play a key role in Syt binding. The structures suggest that the BoNT/DC ganglioside binding sites are independent of the protein receptor binding site. Our results reveal the remarkable versatility in the receptor recognition of the BoNTs.

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Primary Citation of related structures