4IRS image
Deposition Date 2013-01-15
Release Date 2013-09-04
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4IRS
Keywords:
Title:
Structure of the mouse CD1d-PyrC-alpha-GalCer-iNKT TCR complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Antigen-presenting glycoprotein CD1d1
Gene (Uniprot):Cd1d1
Chain IDs:A
Chain Length:285
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Valpha14 (mouse variable domain, human constant domain)
Chain IDs:C
Chain Length:209
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Vbeta8.2 (mouse variable domain, human constant domain)
Chain IDs:D
Chain Length:241
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Enhanced TCR footprint by a novel glycolipid increases NKT-dependent tumor protection.
J.Immunol. 191 2916 2925 (2013)
PMID: 23960235 DOI: 10.4049/jimmunol.1203134

Abstact

NKT cells, a unique type of regulatory T cells, respond to structurally diverse glycolipids presented by CD1d. Although it was previously thought that recognition of glycolipids such as α-galactosylceramide (α-GalCer) by the NKT cell TCR (NKTCR) obeys a key-lock principle, it is now clear this interaction is much more flexible. In this article, we report the structure-function analysis of a series of novel 6''-OH analogs of α-GalCer with more potent antitumor characteristics. Surprisingly, one of the novel carbamate analogs, α-GalCer-6''-(pyridin-4-yl)carbamate, formed novel interactions with the NKTCR. This interaction was associated with an extremely high level of Th1 polarization and superior antitumor responses. These data highlight the in vivo relevance of adding aromatic moieties to the 6''-OH position of the sugar and additionally show that judiciously chosen linkers are a promising strategy to generate strong Th1-polarizing glycolipids through increased binding either to CD1d or to NKTCR.

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Primary Citation of related structures