4IP1 image
Deposition Date 2013-01-09
Release Date 2013-12-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4IP1
Keywords:
Title:
C-terminal domain of the thiol:disulfide interchange protein DsbD, Q488K mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.47 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thiol:disulfide interchange protein DsbD
Gene (Uniprot):dsbD
Mutations:Q488K
Chain IDs:A
Chain Length:132
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
An Extended Active-site Motif Controls the Reactivity of the Thioredoxin Fold.
J.Biol.Chem. 289 8681 8696 (2014)
PMID: 24469455 DOI: 10.1074/jbc.M113.513457

Abstact

Proteins belonging to the thioredoxin (Trx) superfamily are abundant in all organisms. They share the same structural features, arranged in a seemingly simple fold, but they perform a multitude of functions in oxidative protein folding and electron transfer pathways. We use the C-terminal domain of the unique transmembrane reductant conductor DsbD as a model for an in-depth analysis of the factors controlling the reactivity of the Trx fold. We employ NMR spectroscopy, x-ray crystallography, mutagenesis, in vivo functional experiments applied to DsbD, and a comparative sequence analysis of Trx-fold proteins to determine the effect of residues in the vicinity of the active site on the ionization of the key nucleophilic cysteine of the -CXXC- motif. We show that the function and reactivity of Trx-fold proteins depend critically on the electrostatic features imposed by an extended active-site motif.

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Primary Citation of related structures