4IN4 image
Deposition Date 2013-01-03
Release Date 2013-05-15
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4IN4
Keywords:
Title:
Crystal structure of cpd 15 bound to Keap1 Kelch domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kelch-like ECH-associated protein 1
Gene (Uniprot):KEAP1
Chain IDs:A, B, C
Chain Length:299
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Small molecules inhibit the interaction of Nrf2 and the Keap1 Kelch domain through a non-covalent mechanism.
Bioorg.Med.Chem. 21 4011 4019 (2013)
PMID: 23647822 DOI: 10.1016/j.bmc.2013.04.019

Abstact

Keap1 binds to the Nrf2 transcription factor to promote its degradation, resulting in the loss of gene products that protect against oxidative stress. While cell-active small molecules have been identified that modify cysteines in Keap1 and effect the Nrf2 dependent pathway, few act through a non-covalent mechanism. We have identified and characterized several small molecule compounds that specifically bind to the Keap1 Kelch-DC domain as measured by NMR, native mass spectrometry and X-ray crystallography. One compound upregulates Nrf2 response genes measured by a luciferase cell reporter assay. The non-covalent inhibition strategy presents a reasonable course of action to avoid toxic side-effects due to non-specific cysteine modification.

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Primary Citation of related structures