4IH6 image
Deposition Date 2012-12-18
Release Date 2013-07-03
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4IH6
Title:
Hepatitis C Virus polymerase NS5B (BK) with fragment-based compounds
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase
Chain IDs:A, B
Chain Length:570
Number of Molecules:2
Biological Source:Hepatitis C virus
Ligand Molecules
Primary Citation
De novo fragment design: a medicinal chemistry approach to fragment-based lead generation.
J.Med.Chem. 56 3115 3119 (2013)
PMID: 23509929 DOI: 10.1021/jm4002605

Abstact

The use of fragments with low binding affinity for their targets as starting points has received much attention recently. Screening of fragment libraries has been the most common method to find attractive starting points. Herein, we describe a unique, alternative approach to generating fragment leads. A binding model was developed and a set of guidelines were then selected to use this model to design fragments, enabling our discovery of a novel fragment with high LE.

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Primary Citation of related structures