4IGR image
Deposition Date 2012-12-18
Release Date 2013-03-06
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4IGR
Title:
Crystal structure of the kainate receptor GluK3 ligand-binding domain in complex with the agonist ZA302
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutamate receptor, ionotropic kainate 3
Gene (Uniprot):Grik3
Chain IDs:A
Chain Length:258
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
Chemoenzymatic synthesis of new 2,4-syn-functionalized (S)-glutamate analogues and structure-activity relationship studies at ionotropic glutamate receptors and excitatory amino acid transporters.
J.Med.Chem. 56 1614 1628 (2013)
PMID: 23414088 DOI: 10.1021/jm301433m

Abstact

In the mammalian central nervous system, (S)-glutamate (Glu) is released from the presynaptic neuron where it activates a plethora of pre- and postsynaptic Glu receptors. The fast acting ionotropic Glu receptors (iGluRs) are ligand gated ion channels and are believed to be involved in a vast number of neurological functions such as memory and learning, synaptic plasticity, and motor function. The synthesis of 14 enantiopure 2,4-syn-Glu analogues 2b-p is accessed by a short and efficient chemoenzymatic approach starting from readily available cyclohexanone 3. Pharmacological characterization at the iGluRs and EAAT1-3 subtypes revealed analogue 2i as a selective GluK1 ligand with low nanomolar affinity. Two X-ray crystal structures of the key analogue 2i in the ligand-binding domain (LBD) of GluA2 and GluK3 were determined. Partial domain closure was seen in the GluA2-LBD complex with 2i comparable to that induced by kainate. In contrast, full domain closure was observed in the GluK3-LBD complex with 2i, similar to that of GluK3-LBD with glutamate bound.

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