4IG9 image
Deposition Date 2012-12-16
Release Date 2013-11-06
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4IG9
Keywords:
Title:
Structure of NAD-dependent protein deacetylase sirtuin-1 (open state, 2.64 A)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.64 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD-dependent protein deacetylase sirtuin-1
Gene (Uniprot):SIRT1
Chain IDs:A, C, E, G
Chain Length:281
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD-dependent protein deacetylase sirtuin-1
Gene (Uniprot):SIRT1
Chain IDs:B, D, F, H
Chain Length:31
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural and Functional Analysis of Human SIRT1.
J.Mol.Biol. 426 526 541 (2014)
PMID: 24120939 DOI: 10.1016/j.jmb.2013.10.009

Abstact

SIRT1 is a NAD(+)-dependent deacetylase that plays important roles in many cellular processes. SIRT1 activity is uniquely controlled by a C-terminal regulatory segment (CTR). Here we present crystal structures of the catalytic domain of human SIRT1 in complex with the CTR in an open apo form and a closed conformation in complex with a cofactor and a pseudo-substrate peptide. The catalytic domain adopts the canonical sirtuin fold. The CTR forms a β hairpin structure that complements the β sheet of the NAD(+)-binding domain, covering an essentially invariant hydrophobic surface. The apo form adopts a distinct open conformation, in which the smaller subdomain of SIRT1 undergoes a rotation with respect to the larger NAD(+)-binding subdomain. A biochemical analysis identifies key residues in the active site, an inhibitory role for the CTR, and distinct structural features of the CTR that mediate binding and inhibition of the SIRT1 catalytic domain.

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Primary Citation of related structures
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