4IDU image
Deposition Date 2012-12-13
Release Date 2013-04-24
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4IDU
Title:
crystal structure of Schmallenberg virus nucleoprotein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.08 Å
R-Value Free:
0.36
R-Value Work:
0.32
R-Value Observed:
0.32
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SBV nucleoprotein
Gene (Uniprot):N
Chain IDs:A, C, D
Chain Length:233
Number of Molecules:3
Biological Source:Schmallenberg virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SBV nucleoprotein
Gene (Uniprot):N
Chain IDs:B
Chain Length:233
Number of Molecules:1
Biological Source:Schmallenberg virus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE B MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Structure of Schmallenberg orthobunyavirus nucleoprotein suggests a novel mechanism of genome encapsidation
J.Virol. 87 5593 5601 (2013)
PMID: 23468499 DOI: 10.1128/JVI.00223-13

Abstact

Schmallenberg virus (SBV), a newly emerged orthobunyavirus (family Bunyaviridae), has spread rapidly across Europe and has caused congenital abnormalities in the offspring of cattle, sheep, and goats. Like other orthobunyaviruses, SBV contains a tripartite negative-sense RNA genome that encodes four structural and two nonstructural proteins. The nucleoprotein (N) encapsidates the three viral genomic RNA segments and plays a crucial role in viral RNA transcription and replication. Here we report the crystal structure of the bacterially expressed SBV nucleoprotein to a 3.06-Å resolution. The protomer is composed of two domains (N-terminal and C-terminal domains) with flexible N-terminal and C-terminal arms. The N protein has a novel fold and forms a central positively charged cleft for genomic RNA binding. The nucleoprotein purified under native conditions forms a tetramer, while the nucleoprotein obtained following denaturation and refolding forms a hexamer. Our structural and functional analyses demonstrate that both N-terminal and C-terminal arms are involved in N-N interaction and oligomerization and play an essential role in viral RNA synthesis, suggesting a novel mechanism for viral RNA encapsidation and transcription.

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