4IDN image
Deposition Date 2012-12-12
Release Date 2013-01-09
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4IDN
Keywords:
Title:
Human atlastin-1 1-446, C-his6, GppNHp
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Atlastin-1
Gene (Uniprot):ATL1
Chain IDs:A, B
Chain Length:457
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural basis for conformational switching and GTP loading of the large G protein atlastin.
Embo J. 32 369 384 (2013)
PMID: 23334294 DOI: 10.1038/emboj.2012.353

Abstact

Atlastin, a member of the dynamin superfamily, is known to catalyse homotypic membrane fusion in the smooth endoplasmic reticulum (ER). Recent studies of atlastin have elucidated key features about its structure and function; however, several mechanistic details, including the catalytic mechanism and GTP hydrolysis-driven conformational changes, are yet to be determined. Here, we present the crystal structures of atlastin-1 bound to GDP·AlF(4)(-) and GppNHp, uncovering an intramolecular arginine finger that stimulates GTP hydrolysis when correctly oriented through rearrangements within the G domain. Utilizing Förster Resonance Energy Transfer, we describe nucleotide binding and hydrolysis-driven conformational changes in atlastin and their sequence. Furthermore, we discovered a nucleotide exchange mechanism that is intrinsic to atlastin's N-terminal domains. Our results indicate that the cytoplasmic domain of atlastin acts as a tether and homotypic interactions are timed by GTP binding and hydrolysis. Perturbation of these mechanisms may be implicated in a group of atlastin-associated hereditary neurodegenerative diseases.

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Primary Citation of related structures