4IAU image
Deposition Date 2012-12-07
Release Date 2013-06-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4IAU
Title:
Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium
Biological Source:
Source Organism:
Geodia cydonium (Taxon ID: 6047)
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.99 Å
R-Value Free:
0.12
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-gamma-crystallin
Chain IDs:A
Chain Length:163
Number of Molecules:1
Biological Source:Geodia cydonium
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
A novel interdomain interface in crystallins: structural characterization of the [beta][gamma]-crystallin from Geodia cydonium at 0.99 A resolution
Acta Crystallogr.,Sect.D 69 960 967 (2013)
PMID: 23695240 DOI: 10.1107/S0907444913003569

Abstact

The βγ-crystallin superfamily includes highly diverse proteins belonging to all of the kingdoms of life. Based on structural topology, these proteins are considered to be evolutionarily related to the long-lived βγ-crystallins that constitute the vertebrate eye lens. This study reports the crystallographic structure at 0.99 Å resolution of the two-domain βγ-crystallin (geodin) from the sponge Geodia cydonium. This is the most ancient member of the βγ-crystallin superfamily in metazoans. The X-ray structure shows that the geodin domains adopt the typical βγ-crystallin fold with a paired Greek-key motif, thus confirming the hypothesis that the crystallin-type scaffold used in the evolution of bacteria and moulds was recruited very early in metazoans. As a significant new structural feature, the sponge protein possesses a unique interdomain interface made up by pairing between the second motif of the first domain and the first motif of the second domain. The atomic resolution also allowed a detailed analysis of the calcium-binding site of the protein.

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Primary Citation of related structures