4IA3 image
Entry Detail
PDB ID:
4IA3
Title:
Diastereotopic and Deuterium Effects in Gemini
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-12-06
Release Date:
2013-04-24
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Vitamin D3 receptor A
Chain IDs:A
Chain Length:300
Number of Molecules:1
Biological Source:Danio rerio
Polymer Type:polypeptide(L)
Description:Nuclear receptor coactivator 2
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Diastereotopic and deuterium effects in gemini.
J.Med.Chem. 56 3878 3888 (2013)
PMID: 23566225 DOI: 10.1021/jm400032t

Abstact

Changing the geminal methyl groups on 1α,25-dihydroxyvitamin D3 and its analogues to the deuterio versions generally improves the bioactivity. Derivatives of 1α,25-dihydroxyvitamin D3 with two chains emanating at C20, commonly referred to as gemini, are subject to the same phenomenon. Additionally, gemini with different side chains are susceptible to bioactivity differentials where the C17-C20 threo configuration usually imparts higher activity than the corresponding erythro arrangement. In an effort to analyze the deuterium effect on gemini with minimal diastereotopic distortion, we synthesized gemini with equal side chains but introduced deuterium diastereospecifically on either chain. We solved the crystal structures of these compounds in the zebra fish zVDR ligand binding domain as complexes with NCoA-2 coactivator peptide and correlated the findings with growth inhibition in a breast cancer cell line.

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Primary Citation of related structures