4I9W image
Deposition Date 2012-12-05
Release Date 2013-01-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4I9W
Keywords:
Title:
Human two pore domain K+ channel TRAAK (K2P4.1) - Fab complex structure
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Potassium channel subfamily K member 4
Gene (Uniprot):KCNK4
Mutations:N104Q, N108Q
Chain IDs:A, B
Chain Length:309
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ANTIBODY FAB FRAGMENT LIGHT CHAIN
Chain IDs:C (auth: D), E (auth: F)
Chain Length:211
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:ANTIBODY FAB FRAGMENT HEAVY CHAIN
Chain IDs:D (auth: E), F (auth: G)
Chain Length:217
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Domain-swapped chain connectivity and gated membrane access in a Fab-mediated crystal of the human TRAAK K+ channel.
Proc.Natl.Acad.Sci.USA 110 2129 2134 (2013)
PMID: 23341632 DOI: 10.1073/pnas.1218950110

Abstact

TRAAK (TWIK-related arachidonic acid-stimulated K(+) channel, K2P4.1) K(+) ion channels are expressed predominantly in the nervous system to control cellular resting membrane potential and are regulated by mechanical and chemical properties of the lipid membrane. TRAAK channels are twofold symmetric, which precludes a direct extension of gating mechanisms that close canonical fourfold symmetric K(+) channels. We present the crystal structure of human TRAAK in complex with antibody antigen-binding fragments (Fabs) at 2.75-Å resolution. In contrast to a previous structure, this structure reveals a domain-swapped chain connectivity enabled by the helical cap that exchanges two opposing outer helices 180° around the channel. An unrelated conformational change of an inner helix seals a side opening to the membrane bilayer and is associated with structural changes around the K(+)-selectivity filter that may have implications for mechanosensitivity and gating of TRAAK channels.

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Primary Citation of related structures