4I80 image
Deposition Date 2012-12-01
Release Date 2013-03-06
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4I80
Title:
Crystal structure of human menin in complex with a high-affinity macrocyclic peptidomimetics
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic (Taxon ID: 32630)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Menin
Gene (Uniprot):MEN1
Chain IDs:A
Chain Length:550
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:macrocyclic peptidomimetic
Chain IDs:B
Chain Length:9
Number of Molecules:1
Biological Source:synthetic
Ligand Molecules
Peptide-like Molecules
PRD_000967
Primary Citation
Structure-Based Design of High-Affinity Macrocyclic Peptidomimetics to Block the Menin-Mixed Lineage Leukemia 1 (MLL1) Protein-Protein Interaction.
J.Med.Chem. 56 1113 1123 (2013)
PMID: 23244744 DOI: 10.1021/jm3015298

Abstact

Menin is an essential oncogenic cofactor for mixed lineage leukemia 1 (MLL1)-mediated leukemogenesis through its direct interaction with MLL1. Targeting the menin-MLL1 protein-protein interaction represents a promising strategy to block MLL1-mediated leukemogenesis. Employing a structure-based approach and starting from a linear MLL1 octapeptide, we have designed a class of potent macrocyclic peptidomimetic inhibitors of the menin-MLL1 interaction. The most potent macrocyclic peptidomimetic (MCP-1), 34, binds to menin with a K(i) value of 4.7 nM and is >600 times more potent than the corresponding acyclic peptide. Compound 34 is also less peptide-like and has a lower molecular weight than the initial MLL1 peptide. Therefore, compound 34 serves as a promising lead structure for the design of potent and cell-permeable inhibitors of the menin-MLL1 interaction.

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Protein

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Disease

Primary Citation of related structures