4I7Z image
Deposition Date 2012-12-01
Release Date 2013-04-17
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4I7Z
Keywords:
Title:
Crystal structure of cytochrome b6f in DOPG, with disordered Rieske Iron-Sulfur Protein soluble domain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6
Gene (Uniprot):petB
Chain IDs:A
Chain Length:215
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6-f complex subunit 4
Gene (Uniprot):petD
Chain IDs:B
Chain Length:160
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Apocytochrome f
Gene (Uniprot):petA
Chain IDs:C
Chain Length:289
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6-f complex iron-sulfur subunit
Gene (Uniprot):petC
Chain IDs:D
Chain Length:179
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6-f complex subunit 6
Gene (Uniprot):petL
Chain IDs:E
Chain Length:32
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6-f complex subunit 7
Gene (Uniprot):petM
Chain IDs:F
Chain Length:35
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6-f complex subunit 5
Gene (Uniprot):petG
Chain IDs:G
Chain Length:37
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b6-f complex subunit 8
Gene (Uniprot):petN
Chain IDs:H
Chain Length:29
Number of Molecules:1
Biological Source:Mastigocladus laminosus
Primary Citation
Lipid-induced conformational changes within the cytochrome b6f complex of oxygenic photosynthesis.
Biochemistry 52 2649 2654 (2013)
PMID: 23514009 DOI: 10.1021/bi301638h

Abstact

Cytochrome b6f catalyzes quinone redox reactions within photosynthetic membranes to generate a transmembrane proton electrochemical gradient for ATP synthesis. A key step involves the transfer of an electron from the [2Fe-2S] cluster of the iron-sulfur protein (ISP) extrinsic domain to the cytochrome f heme across a distance of 26 Å, which is too large for competent electron transfer but could be bridged by translation-rotation of the ISP. Here we report the first crystallographic evidence of significant motion of the ISP extrinsic domain. It is inferred that extensive crystallographic disorder of the ISP extrinsic domain indicates conformational flexibility. The ISP disorder observed in this structure, in contrast to the largely ordered ISP structure observed in the b6f complex supplemented with neutral lipids, is attributed to electrostatic interactions arising from anionic lipids.

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Primary Citation of related structures