4HY7 image
Entry Detail
PDB ID:
4HY7
Title:
Structural and biochemical characterization of a cytosolic wheat cyclophilin TaCypA-1
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2012-11-13
Release Date:
2013-03-27
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase
Chain IDs:A
Chain Length:171
Number of Molecules:1
Biological Source:Triticum aestivum
Polymer Type:polypeptide(L)
Description:Cyclosporin A
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:Tolypocladium inflatum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ABA B ALA ALPHA-AMINOBUTYRIC ACID
BMT B THR ?
MLE B LEU N-METHYLLEUCINE
MVA B VAL N-METHYLVALINE
SAR B GLY SARCOSINE
Peptide-like Molecules
PRD_000142
Primary Citation
Structural and biochemical characterization of the cytosolic wheat cyclophilin TaCypA-1.
Acta Crystallogr.,Sect.D 69 555 563 (2013)
PMID: 23519664 DOI: 10.1107/S0907444912051529

Abstact

Cyclophilins belong to a family of proteins that bind to the immunosuppressive drug cyclosporin A (CsA). Several members of this protein family catalyze the cis-trans isomerization of peptide bonds preceding prolyl residues. The present study describes the biochemical and structural characteristics of a cytosolic cyclophilin (TaCypA-1) cloned from wheat (Triticum aestivum L.). Purified TaCypA-1 expressed in Escherichia coli showed peptidyl-prolyl cis-trans isomerase activity, which was inhibited by CsA with an inhibition constant of 78.3 nM. The specific activity and catalytic efficiency (kcat/Km) of the purified TaCypA-1 were 99.06 ± 0.13 nmol s(-1) mg(-1) and 2.32 × 10(5) M(-1) s(-1), respectively. The structures of apo TaCypA-1 and the TaCypA-1-CsA complex were determined at 1.25 and 1.20 Å resolution, respectively, using X-ray diffraction. Binding of CsA to the active site of TaCypA-1 did not result in any significant conformational change in the apo TaCypA-1 structure. This is consistent with the crystal structure of the human cyclophilin D-CsA complex reported at 0.96 Å resolution. The TaCypA-1 structure revealed the presence of a divergent loop of seven amino acids (48)KSGKPLH(54) which is a characteristic feature of plant cyclophilins. This study is the first to elucidate the structure of an enzymatically active plant cyclophilin which shows peptidyl-prolyl cis-trans isomerase activity and the presence of a divergent loop.

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Primary Citation of related structures