4HXY image
Deposition Date 2012-11-12
Release Date 2013-07-10
Last Version Date 2023-11-15
Entry Detail
PDB ID:
4HXY
Keywords:
Title:
PlmKR1-Ketoreductase from the first module of phoslactomycin biosynthesis in Streptomyces sp. HK803
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Plm1
Gene (Uniprot):plm1
Chain IDs:A, B
Chain Length:438
Number of Molecules:2
Biological Source:Streptomyces sp. HK803
Primary Citation
Structural and Stereochemical Analysis of a Modular Polyketide Synthase Ketoreductase Domain Required for the Generation of a cis-Alkene.
Chem.Biol. 20 772 783 (2013)
PMID: 23790488 DOI: 10.1016/j.chembiol.2013.04.014

Abstact

The formation of an activated cis-3-cyclohexylpropenoic acid by Plm1, the first extension module of the phoslactomycin polyketide synthase, is proposed to occur through an L-3-hydroxyacyl-intermediate as a result of ketoreduction by an A-type ketoreductase (KR). Here, we demonstrate that the KR domain of Plm1 (PlmKR1) catalyzes the formation of an L-3-hydroxyacyl product. The crystal structure of PlmKR1 revealed a well-ordered active site with a nearby Trp residue characteristic of A-type KRs. Structural comparison of PlmKR1 with B-type KRs that produce D-3-hydroxyacyl intermediates revealed significant differences. The active site of cofactor-bound A-type KRs is in a catalysis-ready state, whereas cofactor-bound B-type KRs are in a precatalytic state. Furthermore, the closed lid loop in substrate-bound A-type KRs restricts active site access from all but one direction, which is proposed to control the stereochemistry of ketoreduction.

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