4HX9 image
Deposition Date 2012-11-09
Release Date 2013-01-16
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4HX9
Keywords:
Title:
Designed Phosphodeoxyribosyltransferase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.68 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 21 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoside deoxyribosyltransferase
Gene (Uniprot):ntd
Mutagens:F13R,E91Q,D92G,V93T,N123S
Chain IDs:A, B, C (auth: E), D (auth: F), E (auth: C), F (auth: D), G, H
Chain Length:157
Number of Molecules:8
Biological Source:Lactobacillus leichmannii
Primary Citation
Phosphodeoxyribosyltransferases, designed enzymes for deoxyribonucleotides synthesis.
J.Biol.Chem. 288 6534 6541 (2013)
PMID: 23325804 DOI: 10.1074/jbc.M112.446492

Abstact

A large number of nucleoside analogues and 2'-deoxynucleoside triphosphates (dNTP) have been synthesized to interfere with DNA metabolism. However, in vivo the concentration and phosphorylation of these analogues are key limiting factors. In this context, we designed enzymes to switch nucleobases attached to a deoxyribose monophosphate. Active chimeras were made from two distantly related enzymes: a nucleoside deoxyribosyltransferase from lactobacilli and a 5'-monophosphate-2'-deoxyribonucleoside hydrolase from rat. Then their unprecedented activity was further extended to deoxyribose triphosphate, and in vitro biosyntheses could be successfully performed with several base analogues. These new enzymes provide new tools to synthesize dNTP analogues and to deliver them into cells.

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Primary Citation of related structures