ISDA: 4HVP

Deposition Date 1989-08-08

Release Date 1990-04-15

Last Version Date 2025-03-26

Entry Detail

PDB ID:

4HVP

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 Angstroms resolution

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.30 Å

R-Value Observed:

0.17

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HIV-1 PROTEASE
Gene (Uniprot):gag-pol
Chain IDs:A, B
Chain Length:99
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

UniProt ID:P03369 Pfam ID:PF00077

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ABA	A	ALA	ALPHA-AMINOBUTYRIC ACID

Ligand Molecules

2NC

Peptide-like Molecules

PRD_000398

Primary Citation

Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution.

Miller, M, Schneider, J, Sathyanarayana, B.K, Toth, M.V, Marshall, G.R, Clawson, L, Selk, L, Kent, S.B, Wlodawer, A, Wlodawer, A, Miller, M, Jaskolski, M, Sathyanarayana, B.K, Baldwin, E, Weber, I.T, Selk, L.M, Clawson, L, Schneider, J, Kent, S.B.H, Weber, I.T, Miller, M, Jaskolski, M, Leis, J, Skalka, A.M, Wlodawer, A, Miller, M, Jaskolski, M, Rao, J.K.M, Leis, J, Wlodawer, A, Schneider, J, Kent, S.B.H.Show

Science 246 1149 1152 (1989)

PMID: 2686029

Abstact

The structure of a complex between a peptide inhibitor with the sequence N-acetyl-Thr-Ile-Nle-psi[CH2-NH]-Nle-Gln-Arg.amide (Nle, norleucine) with chemically synthesized HIV-1 (human immunodeficiency virus 1) protease was determined at 2.3 A resolution (R factor of 0.176). Despite the symmetric nature of the unliganded enzyme, the asymmetric inhibitor lies in a single orientation and makes extensive interactions at the interface between the two subunits of the homodimeric protein. Compared with the unliganded enzyme, the protein molecule underwent substantial changes, particularly in an extended region corresponding to the "flaps" (residues 35 to 57 in each chain), where backbone movements as large as 7 A are observed.

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