4HV7 image
Deposition Date 2012-11-05
Release Date 2012-12-26
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4HV7
Title:
Structure of ricin A chain bound with N-(N-(pterin-7-yl)carbonylglycyl)glycine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ricin
Chain IDs:A (auth: X)
Chain Length:267
Number of Molecules:1
Biological Source:Ricinus communis
Primary Citation
Peptide-conjugated pterins as inhibitors of ricin toxin A.
J.Med.Chem. 56 320 329 (2013)
PMID: 23214944 DOI: 10.1021/jm3016393

Abstact

Several 7-peptide-substituted pterins were synthesized and tested as competitive active-site inhibitors of ricin toxin A (RTA). Focus began on dipeptide conjugates, and these results further guided the construction of several tripeptide conjugates. The binding of these compounds to RTA was studied via a luminescence-based kinetic assay, as well as through X-ray crystallography. Despite the relatively polar, solvent exposed active site, several hydrophobic interactions, most commonly π-interactions not predicted by modeling programs, were identified in all of the best-performing inhibitors. Nearly all of these compounds provide IC₅₀ values in the low micromolar range.

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Primary Citation of related structures