4HRL image
Deposition Date 2012-10-28
Release Date 2013-10-16
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4HRL
Title:
Structural Basis for Eliciting a Cytotoxic Effect in HER2-Overexpressing Cancer Cells via Binding to the Extracellular Domain of HER2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic (Taxon ID: 32630)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Designed Ankyrin Repeat Protein 9_29
Chain IDs:B (auth: A)
Chain Length:171
Number of Molecules:1
Biological Source:synthetic
Polymer Type:polypeptide(L)
Molecule:Receptor tyrosine-protein kinase erbB-2
Gene (Uniprot):ERBB2
Mutations:N46D, N102D, N165D
Chain IDs:A (auth: C)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural Basis for Eliciting a Cytotoxic Effect in HER2-Overexpressing Cancer Cells via Binding to the Extracellular Domain of HER2.
Structure 21 1 13 (2013)
PMID: 24095059 DOI: 10.1016/j.str.2013.08.020

Abstact

Human epidermal growth factor receptor-2 (HER2) is a receptor tyrosine kinase directly linked to the growth of malignancies from various origins and a validated target for monoclonal antibodies and kinase inhibitors. Utilizing a new approach with designed ankyrin repeat proteins (DARPins) as alternative binders, we show that binding of two DARPins connected by a short linker, one targeting extracellular subdomain I and the other subdomain IV, causes much stronger cytotoxic effects on the HER2-addicted breast cancer cell line BT474, surpassing the therapeutic antibody trastuzumab. We determined crystal structures of these DARPins in complex with the respective subdomains. Detailed models of the full-length receptor, constrained by its rigid domain structures and its membrane anchoring, explain how the bispecific DARPins connect two membrane-bound HER2 molecules, distorting them such that they cannot form signaling-competent dimers with any EGFR family member, preventing any kinase dimerization, and thus leading to a complete loss of signaling.

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Primary Citation of related structures